Publications and Presentations by the ACIS Lab

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2017
I. Alzuru, A. Matsunaga, M. Tsugawa, and J. A. B. Fortes, “SELFIE: Self-aware Information Extraction from Digitized Biocollections”, in 13th IEEE International Conference on eScience, 2017.
I. Alzuru, A. Matsunaga, M. Tsugawa, and J. A. B. Fortes, “Task Design and Crowd Sentiment in Biocollections Information Extraction”, in 3rd IEEE International Conference on Collaboration and Internet Computing, 2017.
2015
J. Deck, et al., “Meeting report: Identifying practical applications of ontologies for biodiversity informatics”, Standards in Genomic Sciences C7 - 25, vol. 10, p. 1-6, 2015.
S. Soomro, A. Matsunaga, and J. A. B. Fortes, “Simplifying Extract-Transform-Load for Ranked Hierarchical Trees via Mapping Specifications”, in Formalisms for Reuse and Systems Integration, vol. 346, T. Bouabana-Tebibel and S. H. Rubin, Eds. 2015, p. 203-225.
2014
M. Tsugawa, A. Matsunaga, and J. A. B. Fortes, “Cloud Computing Security: What Changes with Software-Defined Networking?”, in Secure Cloud Computing, S. Jajodia, K. Kant, P. Samarati, A. Singhal, V. Swarup, and C. Wang, Eds. 2014, p. 77-93.
M. Tsugawa, A. Matsunaga, and J. A. B. Fortes, “Cloud Networking to Support Data Intensive Applications”, in Cloud Computing for Data-Intensive Applications, X. Li and J. Qiu, Eds. 2014, p. 61-81.
T. S. Kang, M. Tsugawa, A. Matsunaga, T. Hirofuchi, and J. A. B. Fortes, “Design and Implementation of Middleware for Cloud Disaster Recovery via Virtual Machine Migration Management”, in 2014 IEEE/ACM 7th International Conference on Utility and Cloud Computing (UCC), London, United Kingdom, 2014, p. 166-175.
S. Soomro, A. Matsunaga, and J. A. B. Fortes, “Mapping Specifications for Ranked Hierarchical Trees in Data Integration Systems”, in 2014 IEEE International Conference on Information Reuse and Integration (IRI 2014), San Francisco, California, USA, 2014, p. 269-276.
A. Matsunaga, A. Mast, and J. A. B. Fortes, “Reaching Consensus in Crowdsourced Transcription of Biocollections Information”, in e-Science (e-Science), 2014 IEEE 10th International Conference on, Guarujá, Brazil, 2014, vol. 1, p. 57-64.
R. L. Walls, et al., “Semantics in Support of Biodiversity Knowledge Discovery: An Introduction to the Biological Collections Ontology and Related Ontologies”, PLoS ONE, vol. 9, p. e89606, 2014.
R. Walls, R. Guralnick, J. Deck, and A. Matsunaga, “A Specimen-based View of the World: Using the Biological Collections Ontology to Model Biodiversity Collections”, in 2014 ICBO Workshop: Starting an OBI-based Biobank Ontology, Houston, TX, USA, 2014, p. 64-66.
G. Lee, et al., “Towards real-time communication between in vivo neurophysiological data sources and simulator-based brain biomimetic models”, Journal of Computational Surgery, vol. 3, no. 12, 2014.
2013
A. Matsunaga, et al., “A Computational- and Storage-Cloud for Integration of Biodiversity Collections”, in 2013 IEEE 9th International Conference on e-Science, Beijing, China, 2013, p. 78-87.
2011
A. Matsunaga, P. Riteau, M. Tsugawa, and J. A. B. Fortes, “Crosscloud Computing”, in High Performance Computing: From Grids and Clouds to Exascale, vol. 20, F. Ian, G. Wolfgang, G. Lucio, and J. R. Gerhard, Eds. 2011, p. 94-108.
P. Rattanatamrong, A. Matsunaga, A. J. Brockmeier, J. C. Sanchez, J. Principe, and J. A. B. Fortes, “Towards Closed-Loop Brain-Machine Experiments across Wide-Area Networks”, in Proceedings of the 5th International IEEE EMBS Conference on Neural Engineering, Cancun, Mexico, 2011, p. 453-456.
2010
A. Matsunaga, “'Automatic enablement, coordination and resource usage prediction of unmodified applications on clouds”, 2010.
P. Rattanatamrong, A. Matsunaga, and J. A. B. Fortes, “BMI CyberWorkstation: A cyberinfrastructure for collaborative experimental research on Brain-Machine Interfaces”, in Proceedings of the 6th International Conference on Collaborative Computing: Networking, Applications and Worksharing (CollaborateCom), Chicago, Illinois, 2010, p. 1-10.
P. Rattanatamrong, et al., “Model development, testing and experimentation in a CyberWorkstation for Brain-Machine Interface research”, in 32nd Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC 2010), Buenos Aires, 2010, p. 4339 - 4342.
A. Matsunaga, M. Tsugawa, and J. Fortes, “Scaling-out CloudBLAST: Combining Technologies to BLAST on the Sky”, in The Third IEEE International Scalable Computing Challenge (SCALE 2010), Melbourne, Australia, 2010.
P. Riteau, M. Tsugawa, A. Matsunaga, J. A. B. Fortes, and K. Keahey, “Sky Computing on FutureGrid and Grid’5000 (poster)”, in TeraGrid'10, Pittsburgh, PA, 2010.
A. Matsunaga and J. A. B. Fortes, “On the use of machine learning to predict the time and resources consumed by applications”, in Proceedings of the 2010 10th IEEE/ACM International Conference on Cluster, Cloud and Grid Computing, 2010, p. 495-504.
M. Tsugawa, P. Riteau, A. Matsunaga, and J. A. B. Fortes, “User-Level Virtual Networking Mechanisms to Support Virtual Machine Migration Over Multiple Clouds”, in IEEE International Workshop on Management of Emerging Networks and Services, Miami, Florida, 2010, p. 588-592.
2009
S. B. Sinnott, A. Matsunaga, E. W. Bucholz, and J. A. B. Fortes, “Atomic-Scale Friction Research Education and Synergy Hub”, in Proceedings of 2009 NSF Engineering Research and Innovation Conference, Honolulu, Hawaii, 2009.

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